PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03801.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 359aa    MW: 39336.3 Da    PI: 10.4465
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03801.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.21.2e-28211342103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   F+ k++++++d++++ +++w   +n+f+v+d+  f++ +Lp+yFkh+nfaSFvRQLn+Y     +  +++ +s        
  Zmw_sc03801.1.g00050.1.am.mk  21 FVAKTFHMVSDPATDAVVRWGVASNTFLVVDPAAFSDYLLPSYFKHRNFASFVRQLNTYVIFDASPARATFSSerscralg 101
                                   9********************999***********************************8666665555544457787777 PP

                                   ....XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ....kekiweFkhksFkkgkkellekikrkkse 103
                                       + + weF+h+sF +g+++ll  i rkk++
  Zmw_sc03801.1.g00050.1.am.mk 102 frkvDADRWEFAHESFLRGQTQLLPLIARKKKN 134
                                   665449************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3111125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-3617131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.11E-2618131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-112144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2421131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-115971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-117284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGSECKLQLH AEQQAGAIAP FVAKTFHMVS DPATDAVVRW GVASNTFLVV DPAAFSDYLL  60
PSYFKHRNFA SFVRQLNTYV IFDASPARAT FSSERSCRAL GFRKVDADRW EFAHESFLRG  120
QTQLLPLIAR KKKNKPGCGG RELRDEGEEV RGTIRAVQRL REEQRGMDEE LQAMDRRLQA  180
AESRPGQMMA FLAKLADEPG VVLRAMLAKK EELAAAGGNG ASPPALEAPG KRRRISGAET  240
GRGDLGGVAD QGMGAVQRSH VEAGAVALAL RNFLKVSHTY ATALATRAAA TPLALRIRLR  300
VALPEMKHLA LHIRPRTAPP VSSSRCDLLP VRDEAPLVMA HLYHFRSHRP LLLFTPGSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-211813126129Heat shock factor protein 1
5d5v_B5e-211813126129Heat shock factor protein 1
5d5v_D5e-211813126129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456302.11e-115hypothetical protein SORBIDRAFT_03g033750
SwissprotQ942D61e-115HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLC5XJ361e-115C5XJ36_SORBI; Putative uncharacterized protein Sb03g033750
STRINGSb03g033750.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141